Package: OpEnHiMR 0.1.1
OpEnHiMR: Optimization Based Ensemble Model for Prediction of Histone Modifications in Rice
The comprehensive knowledge of epigenetic modifications in plants, encompassing histone modifications in regulating gene expression, is not completely ingrained. It is noteworthy that histone deacetylation and histone H3 lysine 27 trimethylation (H3K27me3) play a role in repressing transcription in eukaryotes. In contrast, histone acetylation (H3K9ac) and H3K4me3 have been inevitably linked to the stimulation of gene expression, which significantly influences plant development and plays a role in plant responses to biotic and abiotic stresses. To our knowledge this the first multiclass classifier for predicting histone modification in plants. <doi:10.1186/s12864-019-5489-4>.
Authors:
OpEnHiMR_0.1.1.tar.gz
OpEnHiMR_0.1.1.zip(r-4.5)OpEnHiMR_0.1.1.zip(r-4.4)OpEnHiMR_0.1.1.zip(r-4.3)
OpEnHiMR_0.1.1.tgz(r-4.4-any)OpEnHiMR_0.1.1.tgz(r-4.3-any)
OpEnHiMR_0.1.1.tar.gz(r-4.5-noble)OpEnHiMR_0.1.1.tar.gz(r-4.4-noble)
OpEnHiMR_0.1.1.tgz(r-4.4-emscripten)OpEnHiMR_0.1.1.tgz(r-4.3-emscripten)
OpEnHiMR.pdf |OpEnHiMR.html✨
OpEnHiMR/json (API)
# Install 'OpEnHiMR' in R: |
install.packages('OpEnHiMR', repos = c('https://diprosinha.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 months agofrom:4f31dd1ee2. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 23 2024 |
R-4.5-win | OK | Nov 23 2024 |
R-4.5-linux | OK | Nov 23 2024 |
R-4.4-win | OK | Nov 23 2024 |
R-4.4-mac | OK | Nov 23 2024 |
R-4.3-win | OK | Nov 23 2024 |
R-4.3-mac | OK | Nov 23 2024 |
Exports:pred_hmc
Dependencies:ade4askpassbackportsbase64encBiocGenericsBiostringsbitbit64bitopsblobbrewbriobroombslibcachemcallrcaretcellrangerclassclicliprclockcodetoolscoincolorspacecommonmarkconflictedcpp11crayoncredentialscurldata.tableDBIdbplyrdescdevtoolsdiagramdiffobjdigestdownlitdplyrdtplyre1071ellipsisentropyevaluatefansifarverfastmapfontawesomeforcatsforeachfsftrCOOLfuturefuture.applygarglegbmgenericsGenomeInfoDbGenomeInfoDbDatagertggplot2ghgitcredsglobalsgluegoogledrivegooglesheets4gowergtablehardhathavenhighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2idsiniipredIRangesisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelavalibcoinlifecyclelistenvlubridatemagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUIModelMetricsmodelrmodeltoolsmultcompmunsellmvtnormnlmennetnumDerivopensslparallellypartypillarpixmappkgbuildpkgconfigpkgdownpkgloadplyrpraiseprettyunitspROCprocessxprodlimprofvisprogressprogressrpromisesproxypspurrrR6raggrandomForestrappdirsrcmdcheckRColorBrewerRcppRcppArmadilloRCurlreadrreadxlrecipesrematchrematch2remotesreprexreshape2rlangrmarkdownroxygen2rpartrprojrootrstudioapirversionsrvestS4VectorssandwichsassscalessegmentedselectrseqinrsessioninfoshapeshinysourcetoolsspsplitstackshapeSQUAREMstringistringrstrucchangesurvivalsyssystemfontstestthattextshapingTH.datatibbletidyrtidyselecttidyversetimechangetimeDatetinytextzdbUCSC.utilsurlcheckerusethisutf8uuidvctrsviridisLitevroomwaldowhiskerwithrxfunxml2xopenxtableXVectoryamlzipzlibbioczoo
Readme and manuals
Help Manual
Help page | Topics |
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Prediction of Histone Modification for Multiclass Data | pred_hmc |