{ "_id": "6a101ea0acfb0bcc41c8ad3c", "Package": "OpEnHiMR", "Type": "Package", "Title": "Optimization Based Ensemble Model for Prediction of Histone\nModifications in Rice", "Version": "0.1.1", "Authors@R": "c(person(\"Dipro\", \"Sinha\", role = c(\"aut\",\"cre\"), email = \"diprosinha@gmail.com\"),\nperson(\"Sneha\", \"Murmu\", role = c(\"aut\")),\nperson(\"Girish Kumar\", \"Jha\", role = c(\"aut\")),\nperson(\"Md\", \"Yeasin\", role = c(\"aut\")),\nperson(\"Saikath\", \"Das\", role = c(\"aut\")),\nperson(\"Sougata\", \"Bhattacharjee\", role = c(\"aut\")),\nperson(\"Dwijesh Chandra\", \"Mishra\", role = c(\"aut\")),\nperson(\"Neeraj\", \"Budhlakoti\", role = c(\"aut\")),\nperson(\"Sudhir\", \"Srivastava\", role = c(\"aut\")),\nperson(\"Sunil\", \"Archak\", role = c(\"aut\")))", "Description": "The comprehensive knowledge of epigenetic modifications in\nplants, encompassing histone modifications in regulating gene\nexpression, is not completely ingrained. It is noteworthy that\nhistone deacetylation and histone H3 lysine 27 trimethylation\n(H3K27me3) play a role in repressing transcription in\neukaryotes. In contrast, histone acetylation (H3K9ac) and\nH3K4me3 have been inevitably linked to the stimulation of gene\nexpression, which significantly influences plant development\nand plays a role in plant responses to biotic and abiotic\nstresses. To our knowledge this the first multiclass classifier\nfor predicting histone modification in plants.\n.", "License": "GPL-3", "Encoding": "UTF-8", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-14 07:23:09 UTC", "User": "root" }, "Author": "Dipro Sinha [aut, cre], Sneha Murmu [aut], Girish Kumar Jha\n[aut], Md Yeasin [aut], Saikath Das [aut], Sougata\nBhattacharjee [aut], Dwijesh Chandra Mishra [aut], Neeraj\nBudhlakoti [aut], Sudhir Srivastava [aut], Sunil Archak [aut]", "Maintainer": "Dipro Sinha ", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev git make libharfbuzz-dev libgit2-dev libicu-dev\nlibjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev\nlibxml2-dev libssl-dev libx11-dev zlib1g-dev", "Repository": "https://diprosinha.r-universe.dev", "Date/Publication": "2024-05-31 02:40:36 UTC", "RemoteUrl": "https://github.com/cran/OpEnHiMR", "RemoteRef": "HEAD", "RemoteSha": "4f31dd1ee278023079cc1f297c9e9e6cde93f065", "MD5sum": "5c721f120706c109b5dc45a533c42cbb", "_user": "diprosinha", "_type": "src", "_file": "OpEnHiMR_0.1.1.tar.gz", "_fileid": "1b2a0098bbc17d5bb71c8c09530f29c89558c71d8174480979982fb77f55eb52", "_filesize": 81343, "_sha256": "1b2a0098bbc17d5bb71c8c09530f29c89558c71d8174480979982fb77f55eb52", "_created": "2026-05-14T07:23:09.000Z", "_published": "2026-05-22T09:15:12.521Z", "_distro": "noble", "_jobs": [ { "job": 77350549750, "time": 248, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6989393725" }, { "job": 77350549709, "time": 240, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6989392076" }, { "job": 77350549654, "time": 275, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "6989394720" }, { "job": 77350549617, "time": 275, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6989392217" }, { "job": 77350549197, "time": 249, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6989332479" }, { "job": 77350549065, "time": 183, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7157015158" }, { "job": 77350549740, "time": 239, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6989391905" }, { "job": 77350549643, "time": 186, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6989379542" }, { "job": 77350550312, "time": 182, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6989378497" } ], "_buildurl": "https://github.com/r-universe/diprosinha/actions/runs/25847411201", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/OpEnHiMR", "_commit": { "id": "4f31dd1ee278023079cc1f297c9e9e6cde93f065", "author": "Dipro Sinha ", "committer": "cran-robot ", "message": "version 0.1.1\n", "time": 1717123236 }, "_maintainer": { "name": "Dipro Sinha", "email": "diprosinha@gmail.com", "login": "diprosinha", "uuid": 79418256 }, "_registered": true, "_dependencies": [ { "package": "Biostrings", "role": "Imports" }, { "package": "devtools", "role": "Imports" }, { "package": "tidyverse", "role": "Imports" }, { "package": "seqinr", "role": "Imports" }, { "package": "splitstackshape", "role": "Imports" }, { "package": "entropy", "role": "Imports" }, { "package": "party", "role": "Imports" }, { "package": "e1071", "role": "Imports" }, { "package": "caret", "role": "Imports" }, { "package": "randomForest", "role": "Imports" }, { "package": "gbm", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "ftrCOOL", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "RCurl", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "diprosinha", "count": 2, "uuid": 79418256 } ], "_userbio": { "uuid": 79418256, "type": "user", "name": "Dipro Sinha", "description": "Computational Biologist" }, "_downloads": { "count": 573, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/OpEnHiMR" }, "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/OpEnHiMR.html", "manual.pdf" ], "_realowner": "diprosinha", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2024-05-26" }, { "version": "0.1.1", "date": "2024-05-30" } ], "_exports": [ "pred_hmc" ], "_help": [ { "page": "pred_hmc", "title": "Prediction of Histone Modification for Multiclass Data", "topics": [ "pred_hmc" ] } ], "_rundeps": [ "ade4", "askpass", "backports", "base64enc", "BiocGenerics", "Biostrings", "bit", "bit64", "bitops", "blob", "brew", "brio", "broom", "bslib", "cachem", "callr", "caret", "cellranger", "class", "cli", "clipr", "clock", "codetools", "coin", "commonmark", "conflicted", "cpp11", "crayon", "credentials", "curl", "data.table", "DBI", "dbplyr", "desc", "devtools", "diagram", "diffobj", "digest", "downlit", "dplyr", "dtplyr", "e1071", "ellipsis", "entropy", "evaluate", "fansi", "farver", "fastmap", "fontawesome", "forcats", "foreach", "fs", "ftrCOOL", "future", "future.apply", "gargle", "gbm", "generics", "gert", "ggplot2", "gh", "gitcreds", "globals", "glue", "googledrive", "googlesheets4", "gower", "gtable", "hardhat", "haven", "highr", "hms", "htmltools", "htmlwidgets", "httpuv", "httr", "httr2", "ids", "ini", "ipred", "IRanges", "isoband", "iterators", "jquerylib", "jsonlite", "KernSmooth", "knitr", "labeling", "later", "lattice", "lava", "libcoin", "lifecycle", "listenv", "lubridate", "magrittr", "MASS", "Matrix", "matrixStats", "memoise", "mime", "miniUI", "ModelMetrics", "modelr", "modeltools", "multcomp", "mvtnorm", "nlme", "nnet", "numDeriv", "openssl", "otel", "pak", "parallelly", "party", "pillar", "pixmap", "pkgbuild", "pkgconfig", "pkgdown", "pkgload", "plyr", "praise", "prettyunits", "pROC", "processx", "prodlim", "profvis", "progress", "progressr", "promises", "proxy", "ps", "purrr", "R6", "ragg", "randomForest", "rappdirs", "rcmdcheck", "RColorBrewer", "Rcpp", "RcppArmadillo", "RCurl", "readr", "readxl", "recipes", "rematch", "rematch2", "reprex", "reshape2", "rlang", "rmarkdown", "roxygen2", "rpart", "rprojroot", "rstudioapi", "rversions", "rvest", "S4Vectors", "S7", "sandwich", "sass", "scales", "segmented", "selectr", "Seqinfo", "seqinr", "sessioninfo", "shape", "shiny", "sourcetools", "sp", "sparsevctrs", "splitstackshape", "SQUAREM", "stringi", "stringr", "strucchange", "survival", "sys", "systemfonts", "testthat", "textshaping", "TH.data", "tibble", "tidyr", "tidyselect", "tidyverse", "timechange", "timeDate", "tinytex", "tzdb", "urlchecker", "usethis", "utf8", "uuid", "vctrs", "viridisLite", "vroom", "waldo", "whisker", "withr", "xfun", "xml2", "xopen", "xtable", "XVector", "yaml", "zip", "zoo" ], "_score": 1, "_indexed": true, "_nocasepkg": "openhimr", "_universes": [ "diprosinha" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-05-14T07:26:22.000Z", "distro": "noble", "commit": "4f31dd1ee278023079cc1f297c9e9e6cde93f065", "fileid": "7c332c226d58780844322c9a7373e2e1db230d312ed7b233331891e87e5dac95", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/25847411201" }, { "r": "4.6.0", "os": "linux", "version": "0.1.1", "date": "2026-05-14T07:26:08.000Z", "distro": "noble", "commit": "4f31dd1ee278023079cc1f297c9e9e6cde93f065", "fileid": "39f624d9a65c012711ecef6f7d89c03818689c952167207f9e737f2e0b818c1a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/25847411201" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-05-14T07:26:18.000Z", "commit": "4f31dd1ee278023079cc1f297c9e9e6cde93f065", "fileid": "30bef09871c7bd557516ed83e0b662902ad474250b41a8ea3fb0617fd0866116", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/25847411201" }, { "r": "4.6.0", "os": "mac", "version": "0.1.1", "date": "2026-05-14T07:25:58.000Z", "commit": "4f31dd1ee278023079cc1f297c9e9e6cde93f065", "fileid": "343bd13915a6499fd326dced8901a52fc2acd279119dcd02a0a6249a904b80ae", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/25847411201" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-05-14T07:25:47.000Z", "commit": "4f31dd1ee278023079cc1f297c9e9e6cde93f065", "fileid": "18125e416289820be0cbee709d4fcb434f177d1b1d1ffa1252963538f5b193cd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/25847411201" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-05-14T07:24:55.000Z", "commit": "4f31dd1ee278023079cc1f297c9e9e6cde93f065", "fileid": "b85001c6c4eb312d211b226d3588be606f3447d19f58bf05ecf5c7443d9bfbb3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/25847411201" }, { "r": "4.6.0", "os": "win", "version": "0.1.1", "date": "2026-05-14T07:24:44.000Z", "commit": "4f31dd1ee278023079cc1f297c9e9e6cde93f065", "fileid": "eff45d7c189f9baf3eaefcd002f399cf208cb8e8aa2c23a6ffc88012bdaeb5ee", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/25847411201" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1", "date": "2026-05-22T09:14:48.000Z", "commit": "4f31dd1ee278023079cc1f297c9e9e6cde93f065", "fileid": "72a88e21b52d054141a14dcf5b1983028fc4a5cfbeed0bda63d2c38818c6f5e0", "status": "success", "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/25847411201" } ] }