Package: GB5mcPred 0.1.0
GB5mcPred: Gradient Boosting Algorithm for Predicting Methylation States
DNA methylation of 5-methylcytosine (5mC) is the result of a multi-step, enzyme-dependent process. Predicting these sites in-vitro is laborious, time consuming as well as costly. This ' Gb5mC-Pred ' package is an in-silico pipeline for predicting DNA sequences containing the 5mC sites. It uses a machine learning approach which uses Stochastic Gradient Boosting approach for prediction of the sequences with 5mC sites. This package has been developed by using the concept of Navarez and Roxas (2022) <doi:10.1109/TCBB.2021.3082184>.
Authors:
GB5mcPred_0.1.0.tar.gz
GB5mcPred_0.1.0.zip(r-4.5)GB5mcPred_0.1.0.zip(r-4.4)GB5mcPred_0.1.0.zip(r-4.3)
GB5mcPred_0.1.0.tgz(r-4.4-any)GB5mcPred_0.1.0.tgz(r-4.3-any)
GB5mcPred_0.1.0.tar.gz(r-4.5-noble)GB5mcPred_0.1.0.tar.gz(r-4.4-noble)
GB5mcPred_0.1.0.tgz(r-4.4-emscripten)GB5mcPred_0.1.0.tgz(r-4.3-emscripten)
GB5mcPred.pdf |GB5mcPred.html✨
GB5mcPred/json (API)
# Install 'GB5mcPred' in R: |
install.packages('GB5mcPred', repos = c('https://diprosinha.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 1 years agofrom:0cf9b9499e. Checks:OK: 6 WARNING: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 03 2024 |
R-4.5-win | OK | Nov 03 2024 |
R-4.5-linux | WARNING | Nov 03 2024 |
R-4.4-win | OK | Nov 03 2024 |
R-4.4-mac | OK | Nov 03 2024 |
R-4.3-win | OK | Nov 03 2024 |
R-4.3-mac | OK | Nov 03 2024 |
Exports:Pred5mc
Dependencies:ade4askpassbackportsbase64encBiocGenericsBiostringsbitbit64blobbrewbriobroombslibcachemcallrcaretcellrangerclassclicliprclockcodetoolscoincolorspacecommonmarkconflictedcpp11crayoncredentialscurldata.tableDBIdbplyrdescdevtoolsdiagramdiffobjdigestdoParalleldownlitdplyrdtplyre1071ellipsisentropyevaluatefansifarverfastmapfontawesomeforcatsforeachfsftrCOOLfuturefuture.applygarglegbmgenericsGenomeInfoDbGenomeInfoDbDatagertggplot2ghgitcredsglobalsgluegoogledrivegooglesheets4gowergtablehardhathavenhighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2idsiniipredIRangesisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelavalibcoinlifecyclelistenvlubridatemagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUIModelMetricsmodelrmodeltoolsmultcompmunsellmvtnormnlmennetnumDerivopensslparallellypartypillarpixmappkgbuildpkgconfigpkgdownpkgloadplyrpraiseprettyunitspROCprocessxprodlimprofvisprogressprogressrpromisesproxypspurrrR6raggrandomForestrappdirsrcmdcheckRColorBrewerRcppRcppArmadilloreadrreadxlrecipesrematchrematch2remotesreprexreshape2rlangrmarkdownroxygen2rpartrprojrootrstudioapirversionsrvestS4VectorssandwichsassscalessegmentedselectrseqinrsessioninfoshapeshinysourcetoolsspsplitstackshapeSQUAREMstringistringrstrucchangesurvivalsyssystemfontstestthattextshapingTH.datatibbletidyrtidyselecttidyversetimechangetimeDatetinytextzdbUCSC.utilsurlcheckerusethisutf8uuidvctrsviridisLitevroomwaldowhiskerwithrxfunxml2xopenxtableXVectoryamlzipzlibbioczoo
Readme and manuals
Help Manual
Help page | Topics |
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Pred5mc | Pred5mc |