{
  "_id": "6a1e9f671d7bb097a0a702fc",
  "Package": "GB5mcPred",
  "Type": "Package",
  "Title": "Gradient Boosting Algorithm for Predicting Methylation States",
  "Version": "0.1.0",
  "Authors@R": "c(person(\" Dipro\", \"Sinha\", role = c(\"aut\",\"cre\"), email = \"diprosinha@gmail.com\"),\nperson(\"Sunil\", \"Archak\", role = \"aut\", email = \"sunil.archak@gmail.com\"),\nperson(\"Dwijesh Chandra\", \"Mishra\", role = \"aut\", email = \"dwij.mishra@gmail.com\"),\nperson(\"Tanwy\", \"Dasmandal\", role = \"aut\", email = \"tanwydasmandal20@gmail.com\"),\nperson(\"Md\", \"Yeasin\", role = \"aut\", email = \"yeasin.iasri@gmail.com\"))",
  "Author": "Dipro Sinha [aut, cre], Sunil Archak [aut], Dwijesh Chandra\nMishra [aut], Tanwy Dasmandal [aut], Md Yeasin [aut]",
  "Maintainer": "Dipro Sinha <diprosinha@gmail.com>",
  "Description": "DNA methylation of 5-methylcytosine (5mC) is the result of\na multi-step, enzyme-dependent process. Predicting these sites\nin-vitro is laborious, time consuming as well as costly. This '\nGb5mC-Pred ' package is an in-silico pipeline for predicting\nDNA sequences containing the 5mC sites. It uses a machine\nlearning approach which uses Stochastic Gradient Boosting\napproach for prediction of the sequences with 5mC sites. This\npackage has been developed by using the concept of Navarez and\nRoxas (2022) <doi:10.1109/TCBB.2021.3082184>.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.1",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-02 09:10:00 UTC",
    "User": "root"
  },
  "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev git make libharfbuzz-dev libgit2-dev libicu-dev\nlibjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev\nlibxml2-dev libssl-dev libx11-dev zlib1g-dev",
  "Repository": "https://diprosinha.r-universe.dev",
  "Date/Publication": "2023-07-12 03:36:17 UTC",
  "RemoteUrl": "https://github.com/cran/GB5mcPred",
  "RemoteRef": "HEAD",
  "RemoteSha": "0cf9b9499e07b091b61cdee2230d9acfb2bb1ec0",
  "MD5sum": "83e37947bb057815199bbc5b27a89390",
  "_user": "diprosinha",
  "_type": "src",
  "_file": "GB5mcPred_0.1.0.tar.gz",
  "_fileid": "31086eb31925980f48d8a6b27bb5cea52970915ae08df69089969f1e7bf1773f",
  "_filesize": 2973925,
  "_sha256": "31086eb31925980f48d8a6b27bb5cea52970915ae08df69089969f1e7bf1773f",
  "_created": "2026-06-02T09:10:00.000Z",
  "_published": "2026-06-02T09:16:23.226Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79037469669,
      "time": 303,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7353685777"
    },
    {
      "job": 79037469591,
      "time": 293,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7353681668"
    },
    {
      "job": 79037469639,
      "time": 160,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7353635336"
    },
    {
      "job": 79037469602,
      "time": 173,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7353639491"
    },
    {
      "job": 79036794384,
      "time": 240,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7353578627"
    },
    {
      "job": 79037469576,
      "time": 184,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7353643455"
    },
    {
      "job": 79037469749,
      "time": 197,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7353648098"
    },
    {
      "job": 79037469584,
      "time": 180,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7353642260"
    },
    {
      "job": 79037469578,
      "time": 181,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7353642415"
    }
  ],
  "_buildurl": "https://github.com/r-universe/diprosinha/actions/runs/26809876570",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/GB5mcPred",
  "_commit": {
    "id": "0cf9b9499e07b091b61cdee2230d9acfb2bb1ec0",
    "author": "Dipro Sinha <diprosinha@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.0\n",
    "time": 1689132977
  },
  "_maintainer": {
    "name": "Dipro Sinha",
    "email": "diprosinha@gmail.com",
    "login": "diprosinha",
    "description": "Computational Biologist",
    "uuid": 79418256
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "devtools",
      "role": "Imports"
    },
    {
      "package": "tidyverse",
      "role": "Imports"
    },
    {
      "package": "seqinr",
      "role": "Imports"
    },
    {
      "package": "Biostrings",
      "role": "Imports"
    },
    {
      "package": "splitstackshape",
      "role": "Imports"
    },
    {
      "package": "entropy",
      "role": "Imports"
    },
    {
      "package": "party",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "e1071",
      "role": "Imports"
    },
    {
      "package": "caret",
      "role": "Imports"
    },
    {
      "package": "randomForest",
      "role": "Imports"
    },
    {
      "package": "gbm",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "ftrCOOL",
      "role": "Imports"
    },
    {
      "package": "iterators",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "diprosinha",
      "count": 1,
      "uuid": 79418256
    }
  ],
  "_userbio": {
    "uuid": 79418256,
    "type": "user",
    "name": "Dipro Sinha",
    "description": "Computational Biologist"
  },
  "_downloads": {
    "count": 146,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/GB5mcPred"
  },
  "_searchresults": 3,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GB5mcPred.html",
    "manual.pdf"
  ],
  "_realowner": "diprosinha",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2023-07-11"
    }
  ],
  "_exports": [
    "Pred5mc"
  ],
  "_help": [
    {
      "page": "Pred5mc",
      "title": "Pred5mc",
      "topics": [
        "Pred5mc"
      ]
    }
  ],
  "_rundeps": [
    "ade4",
    "askpass",
    "backports",
    "base64enc",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "brew",
    "brio",
    "broom",
    "bslib",
    "cachem",
    "callr",
    "caret",
    "cellranger",
    "class",
    "cli",
    "clipr",
    "clock",
    "codetools",
    "coin",
    "commonmark",
    "conflicted",
    "cpp11",
    "crayon",
    "credentials",
    "curl",
    "data.table",
    "DBI",
    "dbplyr",
    "desc",
    "devtools",
    "diagram",
    "diffobj",
    "digest",
    "doParallel",
    "downlit",
    "dplyr",
    "dtplyr",
    "e1071",
    "ellipsis",
    "entropy",
    "evaluate",
    "fansi",
    "farver",
    "fastmap",
    "fontawesome",
    "forcats",
    "foreach",
    "fs",
    "ftrCOOL",
    "future",
    "future.apply",
    "gargle",
    "gbm",
    "generics",
    "gert",
    "ggplot2",
    "gitcreds",
    "globals",
    "glue",
    "googledrive",
    "googlesheets4",
    "gower",
    "gtable",
    "hardhat",
    "haven",
    "highr",
    "hms",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr",
    "httr2",
    "ids",
    "ini",
    "ipred",
    "IRanges",
    "isoband",
    "iterators",
    "jquerylib",
    "jsonlite",
    "KernSmooth",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lava",
    "libcoin",
    "lifecycle",
    "listenv",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "matrixStats",
    "memoise",
    "mime",
    "miniUI",
    "ModelMetrics",
    "modelr",
    "modeltools",
    "multcomp",
    "mvtnorm",
    "nlme",
    "nnet",
    "numDeriv",
    "openssl",
    "otel",
    "pak",
    "parallelly",
    "party",
    "pillar",
    "pixmap",
    "pkgbuild",
    "pkgconfig",
    "pkgdown",
    "pkgload",
    "plyr",
    "praise",
    "prettyunits",
    "pROC",
    "processx",
    "prodlim",
    "profvis",
    "progress",
    "progressr",
    "promises",
    "proxy",
    "ps",
    "purrr",
    "R6",
    "ragg",
    "randomForest",
    "rappdirs",
    "rcmdcheck",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "readr",
    "readxl",
    "recipes",
    "rematch",
    "rematch2",
    "reprex",
    "reshape2",
    "rlang",
    "rmarkdown",
    "roxygen2",
    "rpart",
    "rprojroot",
    "rstudioapi",
    "rversions",
    "rvest",
    "S4Vectors",
    "S7",
    "sandwich",
    "sass",
    "scales",
    "segmented",
    "selectr",
    "Seqinfo",
    "seqinr",
    "sessioninfo",
    "shape",
    "shiny",
    "sourcetools",
    "sp",
    "sparsevctrs",
    "splitstackshape",
    "SQUAREM",
    "stringi",
    "stringr",
    "strucchange",
    "survival",
    "sys",
    "systemfonts",
    "testthat",
    "textshaping",
    "TH.data",
    "tibble",
    "tidyr",
    "tidyselect",
    "tidyverse",
    "timechange",
    "timeDate",
    "tinytex",
    "tzdb",
    "urlchecker",
    "usethis",
    "utf8",
    "uuid",
    "vctrs",
    "viridisLite",
    "vroom",
    "waldo",
    "whisker",
    "withr",
    "xfun",
    "xml2",
    "xopen",
    "xtable",
    "XVector",
    "yaml",
    "zip",
    "zoo"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "gb5mcpred",
  "_universes": [
    "diprosinha"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-06-02T09:13:46.000Z",
      "distro": "noble",
      "commit": "0cf9b9499e07b091b61cdee2230d9acfb2bb1ec0",
      "fileid": "37d5f999a436e20a3489d3094b24cb045de2ce4d4cff1139714fd8dc148bb0bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/26809876570"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-06-02T09:13:45.000Z",
      "distro": "noble",
      "commit": "0cf9b9499e07b091b61cdee2230d9acfb2bb1ec0",
      "fileid": "42e1619a9a89651447efb6006759f9a2fef729a8637b17236de12501dae333ae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/26809876570"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-06-02T09:11:54.000Z",
      "commit": "0cf9b9499e07b091b61cdee2230d9acfb2bb1ec0",
      "fileid": "0f2cd1b0644f72b40f42e1348f43dbf6a79db6a9e6fe248c5a66884b0003ca16",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/26809876570"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-06-02T09:12:06.000Z",
      "commit": "0cf9b9499e07b091b61cdee2230d9acfb2bb1ec0",
      "fileid": "6beafa18951a6b647962c1ec300db39473cd715edd558f929ec9328e603b183a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/26809876570"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-06-02T09:13:32.000Z",
      "commit": "0cf9b9499e07b091b61cdee2230d9acfb2bb1ec0",
      "fileid": "4aecb92598738acbc4280c557f3800aae9699ea542af664fc161aa02c12f547b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/26809876570"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-06-02T09:11:51.000Z",
      "commit": "0cf9b9499e07b091b61cdee2230d9acfb2bb1ec0",
      "fileid": "ee0a54b46dcc5d2055fa47aef94e3941d6a7e74f5befe583ad73a0d1cbbf369b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/26809876570"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-06-02T09:11:47.000Z",
      "commit": "0cf9b9499e07b091b61cdee2230d9acfb2bb1ec0",
      "fileid": "3f37eafc402ef8963e6bbdab2db848aa70cb2419ba67cb2b66e877871c766e13",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/26809876570"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-06-02T09:11:45.000Z",
      "commit": "0cf9b9499e07b091b61cdee2230d9acfb2bb1ec0",
      "fileid": "2feb35d15f21d417d85d67c1ede009c1e814bf73d2850754bd563f57b10f5da4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/diprosinha/actions/runs/26809876570"
    }
  ]
}