Package: metaCluster 0.1.1

metaCluster: Metagenomic Clustering

Clustering in metagenomics is the process of grouping of microbial contigs in species specific bins. This package contains functions that extract genomic features from metagenome data, find the number of clusters for that given data and find the best clustering algorithm for binning.

Authors:Dipro Sinha [aut, cre], Sayanti Guha Majumdar [aut], Anu Sharma [aut], Dwijesh Chandra Mishra [aut], Md Yeasin [aut]

metaCluster_0.1.1.tar.gz
metaCluster_0.1.1.zip(r-4.7-any)metaCluster_0.1.1.zip(r-4.6-any)metaCluster_0.1.1.zip(r-4.5-any)
metaCluster_0.1.1.tgz(r-4.6-any)metaCluster_0.1.1.tgz(r-4.5-any)
metaCluster_0.1.1.tar.gz(r-4.7-any)metaCluster_0.1.1.tar.gz(r-4.6-any)
metaCluster_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
metaCluster/json (API)

# Install 'metaCluster' in R:
install.packages('metaCluster', repos = c('https://diprosinha.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 4 scripts 329 downloads 4 exports 134 dependencies

Last updated from:85de6d05bb. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK192
source / vignettesOK229
linux-releaseOK191
macos-releaseOK203
macos-oldrelOK211
windows-develOK89
windows-releaseOK118
windows-oldrelOK102
wasm-releaseOK139

Exports:clust.suiteGC.contentoligo.freqopt.clust.num

Dependencies:abindade4backportsbase64encBiocGenericsBiostringsbootbroombslibcachemcarcarDatacliclustercolorspacecorrplotcowplotcpp11crayoncrosstalkdbscandendextendDerivdigestdoBydplyrDTellipseemmeansestimabilityevaluatefactoextraFactoMineRfarverfastmapflashClustfontawesomeforecastFormulafracdifffsgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhtmltoolshtmlwidgetsIRangesirlbaisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmemoisemgcvmimeminqamodelrmultcompViewmvtnormnlmenloptrnnetnumDerivotelpbkrtestpillarpixmappkgconfigpolynompromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangrmarkdownrstatixS4VectorsS7sassscalesscatterplot3dsegmentedSeqinfoseqinrshowtextshowtextdbspSparseMstringistringrsurvivalsysfontstibbletidyrtidyselecttimeDatetinytexurcautf8vctrsviridisviridisLitewithrxfunXVectoryamlzoo