Package: GB5mcPred
Type: Package
Title: Gradient Boosting Algorithm for Predicting Methylation States
Version: 0.1.0
Authors@R: c(person(" Dipro", "Sinha", role = c("aut","cre"), email = "diprosinha@gmail.com"),
    person("Sunil", "Archak", role = "aut", email = "sunil.archak@gmail.com"),
    person("Dwijesh Chandra", "Mishra", role = "aut", email = "dwij.mishra@gmail.com"),
    person("Tanwy", "Dasmandal", role = "aut", email = "tanwydasmandal20@gmail.com"),
    person("Md", "Yeasin", role = "aut", email = "yeasin.iasri@gmail.com"))
Author: Dipro Sinha [aut, cre], Sunil Archak [aut], Dwijesh Chandra
        Mishra [aut], Tanwy Dasmandal [aut], Md Yeasin [aut]
Maintainer: Dipro Sinha <diprosinha@gmail.com>
Description: DNA methylation of 5-methylcytosine (5mC) is the result of
        a multi-step, enzyme-dependent process. Predicting these sites
        in-vitro is laborious, time consuming as well as costly. This '
        Gb5mC-Pred ' package is an in-silico pipeline for predicting
        DNA sequences containing the 5mC sites. It uses a machine
        learning approach which uses Stochastic Gradient Boosting
        approach for prediction of the sequences with 5mC sites. This
        package has been developed by using the concept of Navarez and
        Roxas (2022) <doi:10.1109/TCBB.2021.3082184>.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.1
Imports: stats, devtools, tidyverse, seqinr, Biostrings,
        splitstackshape, entropy, party, stringr, tibble, doParallel,
        parallel, e1071, caret, randomForest, gbm, foreach, ftrCOOL,
        iterators
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-09-30 08:01:15 UTC; root
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev git make libharfbuzz-dev libgit2-dev libicu-dev
        libjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev
        libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://diprosinha.r-universe.dev
Date/Publication: 2023-07-12 03:36:17 UTC
RemoteUrl: https://github.com/cran/GB5mcPred
RemoteRef: HEAD
RemoteSha: 0cf9b9499e07b091b61cdee2230d9acfb2bb1ec0